Posts Tagged ‘mongoDB’

MongoDB with D3.js

22 Jun 2015

I consider interactive data visualization to be the critical tool for exploration of high-dimensional data.

That’s led me to spend a good amount of time in the last few years learning some new skills (D3 and CoffeeScript) and developing some new tools, particularly the R package R/qtlcharts, which provides interactive versions of the many data visualizations in R/qtl, my long-in-development R package for mapping genetic loci (called quantitative trait loci, QTL) that underlie complex trait variation in experimental organisms.

R/qtlcharts is rough in spots, and while it works well for moderate-sized data sets, it can’t well handle truly large-scale data, as it just dumps all of the data into the file viewed by a web browser.

For large-scale data, one needs to dynamically load slices of the data based on user interactions. It seems best to have a formal database behind the scenes. But I think I’m not unusual, among statisticians, in having almost no experience working with databases. My collaborators tend to keep things in Excel. Even for quite large problems, I keep things in flat files.

So, I’ve been trying to come to understand the whole database business, and how I might use one for larger-scale data visualizations. I think I’ve finally made that last little conceptual step, where I can see what I need to do. I made a small illustration in my d3examples repository on GitHub.